PREFIX rdf:
PREFIX rdfs:
]]>
SELECT DISTINCT * WHERE {
?publicationXref rdf:type bp:publicationXref
OPTIONAL {?publicationXref bp:ID ?ID}
OPTIONAL {?publicationXref bp:DB ?DB}
}
SELECT DISTINCT ?physicalInteraction
?NAME
?PARTICIPANTS
?XREF
?EVIDENCE_CODE
WHERE {
?physicalInteraction rdf:type bp:physicalInteraction
OPTIONAL {?physicalInteraction bp:NAME ?NAME}
OPTIONAL {?physicalInteraction bp:PARTICIPANTS ?PARTICIPANTS}
OPTIONAL {?physicalInteraction bp:XREF ?XREF}
OPTIONAL {?physicalInteraction bp:EVIDENCE ?evidence}
OPTIONAL {?evidence bp:EVIDENCE-CODE ?EVIDENCE_CODE}
}
SELECT DISTINCT * WHERE {
?protein rdf:type bp:protein
OPTIONAL {?protein bp:NAME ?NAME}
OPTIONAL {?protein bp:SHORT-NAME ?SHORT_NAME}
OPTIONAL {?protein bp:ORGANISM ?ORGANISM}
OPTIONAL {?protein bp:XREF ?XREF}
}
SELECT DISTINCT * WHERE {
?rna rdf:type bp:rna
OPTIONAL {?rna bp:NAME ?NAME}
OPTIONAL {?rna bp:SHORT-NAME ?SHORT_NAME}
OPTIONAL {?rna bp:ORGANISM ?ORGANISM}
OPTIONAL {?rna bp:XREF ?XREF}
}
SELECT DISTINCT * WHERE {
?dna rdf:type bp:dna
OPTIONAL {?dna bp:NAME ?NAME}
OPTIONAL {?dna bp:SHORT-NAME ?SHORT_NAME}
OPTIONAL {?dna bp:ORGANISM ?ORGANISM}
OPTIONAL {?dna bp:XREF ?XREF}
}
SELECT DISTINCT * WHERE {
?openControlledVocabulary rdf:type bp:openControlledVocabulary
OPTIONAL {?openControlledVocabulary bp:TERM ?TERM}
OPTIONAL {?openControlledVocabulary bp:XREF ?XREF}
}
SELECT DISTINCT * WHERE {
?unificationXref rdf:type bp:unificationXref
OPTIONAL {?unificationXref bp:ID ?ID}
OPTIONAL {?unificationXref bp:DB ?DB}
}
SELECT DISTINCT ?bioSource ?NAME ?ID WHERE {
?bioSource rdf:type bp:bioSource
OPTIONAL {?bioSource bp:NAME ?NAME}
OPTIONAL {?bioSource bp:TAXON-XREF ?TAXON_XREF}
OPTIONAL {?TAXON_XREF bp:ID ?ID}
}
Defines a mapping from ontology class names used by the BioPax loader to their
corresponding SPARQL queries.
The key name must correspond to a class name within the ontology and it
must be the name of a variable returned by the SPARQL query that is
pointed to by the value-ref.
The values returned by the query for this variable must be the corresponding
class instance's URI.