MAGE to BioWarehouse Mapping

The following documentation describes the semantic translation of each MAGE class, property, and association to the BioWarehouse database schema.
Data marked as < not handled > are not mapped to the BioWarehouse schema and are not loaded.

MAGE Class Index

Array
ArrayDesign
ArrayGroup
ArrayManufacture
ArrayManufactureDeviation
Audit
BibliographicReference
BioAssay
BioAssayCreation
BioAssayData
BioAssayDataCluster
BioAssayDimension
BioAssayMap
BioAssayMapping
BioAssayTreatment
BioAssayTuple
BioDataCube
BioDataTuples
BioDataValues
BioEvent
BioMaterial
BioMaterialMeasurement
BioSample
BioSequence
BioSequence
BioSequence
BioSource
Channel
CompositeCompositeMap
CompositeGroup
CompositePosition
CompositeSequence
CompositeSequenceDimension
Compound

CompoundMeasurement
ConcentrationUnit
ConfidenceIndicator
Contact
Database
DatabaseEntry
DataExternal
DataInternal
Datum
DerivedBioAssay
DerivedBioAssayData
DerivedSignal
Description
DesignElement
DesignElementDimension
DesignElementGroup
DesignElementMap
DesignElementMapping
DesignElementTuple
DistanceUnit
Error
ExpectedValue
Experiment
ExperimentalFactor
ExperimentDesign
ExternalReference
FactorValue
Failed
Feature
FeatureDefect
FeatureDimension
FeatureExtraction
FeatureGroup
FeatureInformation

FeatureLocation
FeatureReporterMap
Fiducial
Hardware
HardwareApplication
Hybridization
Image
ImageAcquisition
LabeledExtract
ManufactureLIMS
ManufactureLIMSBiomaterial
Map
MassUnit
MeasuredBioAssay
MeasuredBioAssayData
MeasuredSignal
Measurement
MismatchInformation
NameValueType
Node
NodeContents
NodeValue
OntologyEntry
Organization
Parameter
Parameterizable
ParameterizableApplication
ParameterValue
Person
PhysicalArrayDesign
PhysicalBioAssay
Position
PositionDelta
PresentAbsent

Protocol
ProtocolApplication
PValue
QuantitationType
QuantitationTypeDimension
QuantitationTypeMap
QuantitationTypeMapping
QuantitationTypeTuple
QuantityUnit
Ratio
Reporter
ReporterCompositeMap
ReporterDimension
ReporterGroup
ReporterPosition
Security
SecurityGroup
SeqFeature
SeqFeatureLocation
SequencePosition
Software
SoftwareApplication
SpecializedQuantitationType
StandardQuantitationType
TemperatureUnit
TimeUnit
Transformation
Treatment
Unit
VolumeUnit
Zone
ZoneDefect
ZoneGroup
ZoneLayout

Array

MAGE Array Class Documentation
BioWarehouse Array_ Table Documentation

Properties

MAGE class property	BW table column
name	Array_.Name
arrayIdentifier	Array_.ArrayIdentifier
arrayXOrigin	Array_.ArrayXOrigin
arrayYOrigin	Array_.ArrayYOrigin
originRelativeTo	Array_.OriginRelativeTo
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >
ArrayDesign_assnref	Array_.ArrayDesign	ArrayDesign.WID
Information_assnref	Array_.Information	ArrayManufacture.WID
ArrayGroup_assnref	Array_.ArrayGroup	ArrayGroup.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	Array_.WID	NameValueType.OtherWID
Descriptions_assnlist	Array_.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
ArrayManufactureDeviations_assnlist	Array_.WID	ArrayManufactureDeviation.Array_

n..n Associations (implemented in DB schema as associative (linking) tables)

none

ArrayDesign

MAGE ArrayDesign Class Documentation
BioWarehouse ArrayDesign Table Documentation

Properties

MAGE class property	BW table column
name	ArrayDesign.Name
version	ArrayDesign.Version
numberOfFeatures	ArrayDesign.NumberOfFeatures
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	ArrayDesign.WID	NameValueType.OtherWID
Descriptions_assnlist	ArrayDesign.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
ProtocolApplications_assnlist	ArrayDesign.WID	ParameterizableApplication.ArrayDesign
FeatureGroups_assnlist	ArrayDesign.WID	DesignElementGroup.ArrayDesign_FeatureGroups

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
ReporterGroups_assnreflist	ArrayDesignWIDReporterGroupWID	ArrayDesignWIDReporterGroupWID.ArrayDesignWID	ArrayDesignWIDReporterGroupWID.ReporterGroupWID
CompositeGroups_assnreflist	ArrayDesignWIDCompositeGrpWID	ArrayDesignWIDCompositeGrpWID.ArrayDesignWID	ArrayDesignWIDCompositeGrpWID.CompositeGroupWID
DesignProviders_assnreflist	ArrayDesignWIDContactWID	ArrayDesignWIDContactWID.ArrayDesignWID	ArrayDesignWIDContactWID.ContactWID

ArrayGroup

MAGE ArrayGroup Class Documentation
BioWarehouse ArrayGroup Table Documentation

Properties

MAGE class property	BW table column
name	ArrayGroup.Name
barcode	ArrayGroup.Barcode
arraySpacingX	ArrayGroup.ArraySpacingX
arraySpacingY	ArrayGroup.ArraySpacingY
numArrays	ArrayGroup.NumArrays
orientationMark	ArrayGroup.OrientationMark
orientationMarkPosition	ArrayGroup.OrientationMarkPosition
width	ArrayGroup.Width
length	ArrayGroup.Length
identifier	DBID.XID

1..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
DistanceUnit_assn	ArrayGroup.ArrayGroup_DistanceUnit	Unit.WID

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	ArrayGroup.WID	NameValueType.OtherWID
Descriptions_assnlist	ArrayGroup.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
Fiducials_assnlist	ArrayGroup.WID	Fiducial.ArrayGroup_Fiducials

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
Arrays_assnreflist	ArrayGroupWIDArrayWID	ArrayGroupWIDArrayWID.ArrayGroupWID	ArrayGroupWIDArrayWID.ArrayWID
SubstrateType_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

ArrayManufacture

MAGE ArrayManufacture Class Documentation
BioWarehouse ArrayManufacture Table Documentation

Properties

MAGE class property	BW table column
name	ArrayManufacture.Name
manufacturingDate	ArrayManufacture.ManufacturingDate
tolerance	ArrayManufacture.Tolerance
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	ArrayManufacture.WID	NameValueType.OtherWID
Descriptions_assnlist	ArrayManufacture.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
QualityControlStatistics_assnlist	ArrayManufacture.WID	NameValueType.OtherWID
FeatureLIMSs_assnlist	ArrayManufacture.WID	ManufactureLIMS.ArrayManufacture_FeatureLIMSs
ProtocolApplications_assnlist	ArrayManufacture.WID	ParameterizableApplication.ArrayManufacture

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
Arrays_assnreflist	ArrayManufactureWIDArrayWID	ArrayManufactureWIDArrayWID.ArrayManufactureWID	ArrayManufactureWIDArrayWID.ArrayWID
ArrayManufacturers_assnreflist	ArrayManufactureWIDContactWID	ArrayManufactureWIDContactWID.ArrayManufactureWID	ArrayManufactureWIDContactWID.ContactWID

ArrayManufactureDeviation

MAGE ArrayManufactureDeviation Class Documentation
BioWarehouse ArrayManufactureDeviation Table Documentation

Properties

none

1..1 Associations

none

n..1 Associations

none

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	ArrayManufactureDeviation.WID	NameValueType.OtherWID
Adjustments_assnlist	ArrayManufactureDeviation.WID	ZoneDefect.ArrayManufactureDeviation
FeatureDefects_assnlist	ArrayManufactureDeviation.WID	FeatureDefect.ArrayManufactureDeviation

n..n Associations (implemented in DB schema as associative (linking) tables)

none

Audit

MAGE Audit Class Documentation
< not handled >

BibliographicReference

MAGE BibliographicReference Class Documentation
BioWarehouse Citation Table Documentation

Properties

MAGE class property	BW table column
title	Citation.Title
authors	Citation.Authors
publication	Citation.Publication
publisher	Citation.Publisher
editor	Citation.Editor
year	Citation.Year
volume	Citation.Volume
issue	Citation.Issue
pages	Citation.Pages
URI	Citation.URI

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	Citation.WID	NameValueType.OtherWID
Descriptions_assnlist	Citation.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
Accessions_assnlist	Citation.WID	CrossReference.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
Parameters_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

BioAssay

MAGE BioAssay Class Documentation
BioWarehouse BioAssay Table Documentation

Properties

MAGE class property	BW table column
name	BioAssay.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioAssay.WID	NameValueType.OtherWID
Descriptions_assnlist	BioAssay.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
Channels_assnreflist	BioAssayWIDChannelWID	BioAssayWIDChannelWID.BioAssayWID	BioAssayWIDChannelWID.ChannelWID
BioAssayFactorValues_assnreflist	BioAssayWIDFactorValueWID	BioAssayWIDFactorValueWID.BioAssayWID	BioAssayWIDFactorValueWID.FactorValueWID

BioAssayCreation

MAGE BioAssayCreation Class Documentation
BioWarehouse BioEvent Table Documentation

Properties

MAGE class property	BW table column
name	BioEvent.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >
Array_assnref	BioEvent.Array_	Array_.WID
PhysicalBioAssayTarget_assnref	BioEvent.PhysicalBioAssayTarget	BioAssay.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioEvent.WID	NameValueType.OtherWID
Descriptions_assnlist	BioEvent.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
ProtocolApplications_assnlist	BioEvent.WID	ParameterizableApplication.BioEvent_ProtocolApplications
SourceBioMaterialMeasurements_assnlist	BioEvent.WID	BioMaterialMeasurement.BioAssayCreation

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioAssayData

MAGE BioAssayData Class Documentation
BioWarehouse BioAssayData Table Documentation

Properties

MAGE class property	BW table column
name	BioAssayData.Name
identifier	DBID.XID

1..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
BioDataValues_assn	BioAssayData.BioAssayData_BioDataValues	BioDataValues.WID

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >
BioAssayDimension_assnref	BioAssayData.BioAssayDimension	BioAssayDimension.WID
DesignElementDimension_assnref	BioAssayData.DesignElementDimension	DesignElementDimension.WID
QuantitationTypeDimension_assnref	BioAssayData.QuantitationTypeDimension	QuantitationTypeDimension.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioAssayData.WID	NameValueType.OtherWID
Descriptions_assnlist	BioAssayData.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
SummaryStatistics_assnlist	BioAssayData.WID	NameValueType.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioAssayDataCluster

MAGE BioAssayDataCluster Class Documentation
BioWarehouse BioAssayDataCluster Table Documentation

Properties

MAGE class property	BW table column
name	BioAssayDataCluster.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >
ClusterBioAssayData_assnref	BioAssayDataCluster.ClusterBioAssayData	BioAssayData.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioAssayDataCluster.WID	NameValueType.OtherWID
Descriptions_assnlist	BioAssayDataCluster.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
Nodes_assnlist	BioAssayDataCluster.WID	Node.BioAssayDataCluster_Nodes

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioAssayDimension

MAGE BioAssayDimension Class Documentation
BioWarehouse BioAssayDimension Table Documentation

Properties

MAGE class property	BW table column
name	BioAssayDimension.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioAssayDimension.WID	NameValueType.OtherWID
Descriptions_assnlist	BioAssayDimension.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
BioAssays_assnreflist	BioAssayDimensioWIDBioAssayWID	BioAssayDimensioWIDBioAssayWID.BioAssayDimensionWID	BioAssayDimensioWIDBioAssayWID.BioAssayWID

BioAssayMap

MAGE BioAssayMap Class Documentation
BioWarehouse BioEvent Table Documentation

Properties

MAGE class property	BW table column
name	BioEvent.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >
BioAssayMapTarget_assnref	BioEvent.BioAssayMapTarget	BioAssay.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioEvent.WID	NameValueType.OtherWID
Descriptions_assnlist	BioEvent.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
ProtocolApplications_assnlist	BioEvent.WID	ParameterizableApplication.BioEvent_ProtocolApplications

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
SourceBioAssays_assnreflist	BioAssayMapWIDBioAssayWID	BioAssayMapWIDBioAssayWID.BioAssayMapWID	BioAssayMapWIDBioAssayWID.BioAssayWID

BioAssayMapping

MAGE BioAssayMapping Class Documentation
BioWarehouse BioAssayMapping Table Documentation

Properties

none

1..1 Associations

none

n..1 Associations

none

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioAssayMapping.WID	NameValueType.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
BioAssayMaps_assnreflist	BAssayMappingWIDBAssayMapWID	BAssayMappingWIDBAssayMapWID.BioAssayMappingWID	BAssayMappingWIDBAssayMapWID.BioAssayMapWID

BioAssayTreatment

MAGE BioAssayTreatment Class Documentation
BioWarehouse BioEvent Table Documentation

Properties

MAGE class property	BW table column
name	BioEvent.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >
PhysicalBioAssay_assnref	BioEvent.PhysicalBioAssay	BioAssay.WID
Target_assnref	BioEvent.Target	BioAssay.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioEvent.WID	NameValueType.OtherWID
Descriptions_assnlist	BioEvent.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
ProtocolApplications_assnlist	BioEvent.WID	ParameterizableApplication.BioEvent_ProtocolApplications

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioAssayTuple

MAGE BioAssayTuple Class Documentation
BioWarehouse BioAssayTuple Table Documentation

Properties

none

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
BioAssay_assnref	BioAssayTuple.BioAssay	BioAssay.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
DesignElementTuples_assnlist	BioAssayTuple.WID	DesignElementTuple.BioAssayTuple

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioDataCube

MAGE BioDataCube Class Documentation
BioWarehouse BioDataValues Table Documentation

Properties

MAGE class property	BW table column
order	BioDataValues.Order_

1..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
DataInternal_assn	BioDataValues.BioDataCube_DataInternal	DataInternal.WID
DataExternal_assn	BioDataValues.BioDataCube_DataExternal	DataExternal.WID

n..1 Associations

none

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioDataValues.WID	NameValueType.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioDataTuples

MAGE BioDataTuples Class Documentation
BioWarehouse BioDataValues Table Documentation

Properties

none

1..1 Associations

none

n..1 Associations

none

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioDataValues.WID	NameValueType.OtherWID
BioAssayTuples_assnlist	BioDataValues.WID	BioAssayTuple.BioDataTuples_BioAssayTuples

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioDataValues

MAGE BioDataValues Class Documentation
BioWarehouse BioDataValues Table Documentation

Properties

none

1..1 Associations

none

n..1 Associations

none

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioDataValues.WID	NameValueType.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioEvent

MAGE BioEvent Class Documentation
BioWarehouse BioEvent Table Documentation

Properties

MAGE class property	BW table column
name	BioEvent.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioEvent.WID	NameValueType.OtherWID
Descriptions_assnlist	BioEvent.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
ProtocolApplications_assnlist	BioEvent.WID	ParameterizableApplication.BioEvent_ProtocolApplications

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioMaterial

MAGE BioMaterial Class Documentation
BioWarehouse BioSource Table Documentation

Properties

MAGE class property	BW table column
name	BioSource.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioSource.WID	NameValueType.OtherWID
Descriptions_assnlist	BioSource.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
QualityControlStatistics_assnlist	BioSource.WID	NameValueType.OtherWID
Treatments_assnlist	BioSource.WID	BioEvent.BioMaterial_Treatments

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
Characteristics_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
MaterialType_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

BioMaterialMeasurement

MAGE BioMaterialMeasurement Class Documentation
BioWarehouse BioMaterialMeasurement Table Documentation

Properties

none

1..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Measurement_assn	BioMaterialMeasurement.Measurement	Measurement.WID

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
BioMaterial_assnref	BioMaterialMeasurement.BioMaterial	BioSource.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioMaterialMeasurement.WID	NameValueType.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioSample

MAGE BioSample Class Documentation
BioWarehouse BioSource Table Documentation

Properties

MAGE class property	BW table column
name	BioSource.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioSource.WID	NameValueType.OtherWID
Descriptions_assnlist	BioSource.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
QualityControlStatistics_assnlist	BioSource.WID	NameValueType.OtherWID
Treatments_assnlist	BioSource.WID	BioEvent.BioMaterial_Treatments

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
Characteristics_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
MaterialType_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
Type_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

BioSequence

MAGE BioSequence Class Documentation
BioWarehouse Protein Table Documentation

Properties

none

1..1 Associations

none

n..1 Associations

none

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

none

n..n Associations (implemented in DB schema as associative (linking) tables)

none

BioSequence

MAGE BioSequence Class Documentation
BioWarehouse Protein Table Documentation

Properties

MAGE class property	BW table column
name	Protein.Name
length	Protein.Length
isApproximateLength	Protein.LengthApproximate
sequence	Protein.AASequence
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	Protein.WID	NameValueType.OtherWID
Descriptions_assnlist	Protein.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
SequenceDatabases_assnlist	Protein.WID	CrossReference.OtherWID
SeqFeatures_assnlist	Protein.WID	Feature.SequenceWID

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
OntologyEntries_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
PolymerType_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
Type_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
Species_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

BioSequence

MAGE BioSequence Class Documentation
BioWarehouse NucleicAcid Table Documentation

Properties

MAGE class property	BW table column
name	NucleicAcid.Name
length	NucleicAcid.MoleculeLength
isApproximateLength	NucleicAcid.MoleculeLengthApproximate
isCircular	NucleicAcid.Topology
identifier	DBID.XID
sequence	Subsequence.Sequence

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	NucleicAcid.WID	NameValueType.OtherWID
Descriptions_assnlist	NucleicAcid.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
SequenceDatabases_assnlist	NucleicAcid.WID	CrossReference.OtherWID
SeqFeatures_assnlist	NucleicAcid.WID	Feature.SequenceWID

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
OntologyEntries_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
PolymerType_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
Type_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
Species_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

BioSource

MAGE BioSource Class Documentation
BioWarehouse BioSource Table Documentation

Properties

MAGE class property	BW table column
name	BioSource.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioSource.WID	NameValueType.OtherWID
Descriptions_assnlist	BioSource.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
QualityControlStatistics_assnlist	BioSource.WID	NameValueType.OtherWID
Treatments_assnlist	BioSource.WID	BioEvent.BioMaterial_Treatments

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
SourceContact_assnreflist	BioSourceWIDContactWID	BioSourceWIDContactWID.BioSourceWID	BioSourceWIDContactWID.ContactWID
Characteristics_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
MaterialType_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

Channel

MAGE Channel Class Documentation
BioWarehouse Channel Table Documentation

Properties

MAGE class property	BW table column
name	Channel.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	Channel.WID	NameValueType.OtherWID
Descriptions_assnlist	Channel.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
Labels_assnreflist	ChannelWIDCompoundWID	ChannelWIDCompoundWID.ChannelWID	ChannelWIDCompoundWID.CompoundWID

CompositeCompositeMap

MAGE CompositeCompositeMap Class Documentation
BioWarehouse BioEvent Table Documentation

Properties

MAGE class property	BW table column
name	BioEvent.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >
CompositeSequence_assnref	BioEvent.CompositeSequence	DesignElement.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	BioEvent.WID	NameValueType.OtherWID
Descriptions_assnlist	BioEvent.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
CompositePositionSources_assnlist	BioEvent.WID	SequencePosition.CompositeCompositeMap
ProtocolApplications_assnlist	BioEvent.WID	ParameterizableApplication.BioEvent_ProtocolApplications

n..n Associations (implemented in DB schema as associative (linking) tables)

none

CompositeGroup

MAGE CompositeGroup Class Documentation
BioWarehouse DesignElementGroup Table Documentation

Properties

MAGE class property	BW table column
name	DesignElementGroup.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	DesignElementGroup.WID	NameValueType.OtherWID
Descriptions_assnlist	DesignElementGroup.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
CompositeSequences_assnreflist	ComposGrpWIDComposSequenceWID	ComposGrpWIDComposSequenceWID.CompositeGroupWID	ComposGrpWIDComposSequenceWID.CompositeSequenceWID
Types_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID
Species_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

CompositePosition

MAGE CompositePosition Class Documentation
BioWarehouse SequencePosition Table Documentation

Properties

MAGE class property	BW table column
start	SequencePosition.Start_
end	SequencePosition.End

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Composite_assnref	SequencePosition.Composite	DesignElement.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	SequencePosition.WID	NameValueType.OtherWID
MismatchInformation_assnlist	SequencePosition.WID	MismatchInformation.CompositePosition

n..n Associations (implemented in DB schema as associative (linking) tables)

none

CompositeSequence

MAGE CompositeSequence Class Documentation
BioWarehouse DesignElement Table Documentation

Properties

MAGE class property	BW table column
name	DesignElement.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	DesignElement.WID	NameValueType.OtherWID
Descriptions_assnlist	DesignElement.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
BiologicalCharacteristics_assnreflist	CompositeSeqWIDBioSeqWID	CompositeSeqWIDBioSeqWID.CompositeSequenceWID	CompositeSeqWIDBioSeqWID.BioSequenceWID
ReporterCompositeMaps_assnreflist	ComposSeqWIDRepoComposMapWID	ComposSeqWIDRepoComposMapWID.CompositeSequenceWID	ComposSeqWIDRepoComposMapWID.ReporterCompositeMapWID
CompositeCompositeMaps_assnreflist	ComposSeqWIDComposComposMapWID	ComposSeqWIDComposComposMapWID.CompositeSequenceWID	ComposSeqWIDComposComposMapWID.CompositeCompositeMapWID
ControlType_assn	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

CompositeSequenceDimension

MAGE CompositeSequenceDimension Class Documentation
BioWarehouse DesignElementDimension Table Documentation

Properties

MAGE class property	BW table column
name	DesignElementDimension.Name
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	DesignElementDimension.WID	NameValueType.OtherWID
Descriptions_assnlist	DesignElementDimension.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
CompositeSequences_assnreflist	ComposSeqDimensWIDComposSeqWID	ComposSeqDimensWIDComposSeqWID.CompositeSequenceDimensionWID	ComposSeqDimensWIDComposSeqWID.CompositeSequenceWID

Compound

MAGE Compound Class Documentation
BioWarehouse Chemical Table Documentation

Properties

MAGE class property	BW table column
name	Chemical.Name
isSolvent	Chemical.WaterSolubility
identifier	DBID.XID

1..1 Associations

none

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Security_assnref	< not handled >

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	Chemical.WID	NameValueType.OtherWID
Descriptions_assnlist	Chemical.WID	CommentTable.OtherWID
AuditTrail_assnlist	< not handled >
ComponentCompounds_assnlist	Chemical.WID	CompoundMeasurement.Compound_ComponentCompounds
ExternalLIMS_assn	Chemical.WID	CrossReference.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

MAGE class association	Associative table	BW Table.Column for this object	BW Table.Column for related object
CompoundIndices_assnlist	CrossReference	CrossReference.OtherWID	CrossReference.CrossWID

CompoundMeasurement

MAGE CompoundMeasurement Class Documentation
BioWarehouse CompoundMeasurement Table Documentation

Properties

none

1..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Measurement_assn	CompoundMeasurement.Measurement	Measurement.WID

n..1 Associations

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
Compound_assnref	CompoundMeasurement.Compound	Chemical.WID

1..n Associations (implemented in DB schema as the inverse n..1 relationship)

MAGE class association	BW Table.Column for this object	BW Table.Column for related object
PropertySets_assnlist	CompoundMeasurement.WID	NameValueType.OtherWID

n..n Associations (implemented in DB schema as associative (linking) tables)

none